Function reference • factR2

All functions
`buildCDS()`	Build coding segments
`createfactRObject()`	Construct factR object class
`predictNMD(<factR>)` `testASNMDevents(<factR>)`	NMD predictions at transcript and exon levels
`rowNames(<factR>)` `samples(<factR>)` `colNames(<factR>)` `colNames<-`(<factR>) `ident(<factR>)` `counts(<factR>)`	Display factR2 samples and expression data
`addTxCounts(<factR>)` `testGeneCorr(<factR>)`	Expression/samples-related functions
`exportGTF(<factR>)` `exportTable(<factR>)` `exportAll(<factR>)`	Exporting data from factRObject
`granges(<factR>)` `activeSet(<factR>)` `activeSet<-`(<factR>) `listSets(<factR>)` `features(<factR>)` `genes(<factR>)` `gns(<factR>)` `transcripts(<factR>)` `txs(<factR>)` `ase(<factR>)` `domains(<factR>)`	Display factR2 object data
`plotTranscripts(<factR>)` `plotDomains(<factR>)` `plot2way(<factR>)`	Plot exon and domain architectures
`getAAsequence(<factR>)` `predictDomains(<factR>)`	Protein-level functions
`runfactR()`	Run factR workflow
`factRObject-class`	factRObject Class
`getAScons(<factR>)`	Quantify feature conservation
`listSupportedGenomes()`	List supported genomes

Reference