Changelog

factR2 0.99.0

• First release of factR2

factR2 0.99.1

• Added functionalities to work with expression levels
  • addTxCounts() : Imports transcript-level counts and calculates normalised gene-level and transcript-level expressions. Will also deduce the splicing efficiencies of alternative exons (PSI values) based on transcript-level expression.
  • testGeneCorr() : Tests the causality of gene expression changes against the splicing of AS-NMD exons to provide insights into the regulatory function of alternative exons.
  • plot2way() : Plots the values from any 2 features as a scatterplot.

factR2 0.99.2

• getAScons() now computes conservation scores of flanking intronic segments.
• getAScons() will now import pre-downloaded GSscore databases and prompts user to download available databases.